They certainly would have been AGM's and I would guess since the controller is cactus as well it was possibly the cause of the battery fail, not uncommon actually............ As Boots said the fuse will protect the wiring but in this case the charge to destroy the battery wouldn't be anywhere near whats needed to let the fuse go, the controller could have malfunctioned and just shunted 15v or so into the battery to cook it , not unheard of, if the battery dropped a cell and cooked it shouldn't have killed the controller but could be a combination of both .. lost a GEL that way once, I was suss about the controller but it checked out okay later so dropped cell likely but I kept an eye on things so discovered it before anything else happened, caught it as it was in melt down .............
Calcium/acid will go Boom, AGM/GELs will melt down, LiPo4 will melt down as well but no fire, while Lithium Ion will become a fire ball.
The van when parked up should have everything shut down, then if you plug in for battery charging just the charger fired up and looked at regularly along with the battery, some chargers shouldn't be left on all the time as they are not really trust worthy I have found and led light display jobs don't tell you anything so shouldn't be left on forever I reckon but thats for AGM/GELS, Lithium once you park up if they are near full charge just shut them down and leave them, mine is very happy shut down at 70-80% and gets a boost just before we head off, never kept at 100%, they don't like it.... water pumps should be shut down as well or it could run dry....
I don't trust these auto selection types they can get it wrong ...........................